Rapid Sampling, Pooling and Targeted Deep Sequencing for Effective Malaria Molecular Surveillance
Ghana, 2022
Reference ID
NMIMR_POOLING
Producer(s)
Prof Anita Ghansah
Collections
Created on
Nov 26, 2024
Last modified
Nov 26, 2024
Page views
89
Identification
Survey ID Number
NMIMR_POOLING
Title
Rapid Sampling, Pooling and Targeted Deep Sequencing for Effective Malaria Molecular Surveillance
Abbreviation or Acronym
Pooling Project
Country
| Name | Country code |
|---|---|
| Ghana | GH |
Kind of Data
sample survey data[ssd]
Unit of Analysis
Individual/Facility level
Version
Version Description
v1
Scope
Notes
The “Pooling Project” is an innovative malaria molecular surveillance (MMS) system which combines sampling, pooling and next generation sequencing to effectively monitor antimalarial resistance at a reduced cost. This project is a collaborative effort between the Noguchi memorial institute for medical research (NMIMR), the Ghana National malaria elimination program (NMEP) and supported by the Bailey lab-Brown University. The aim of the project is to ultimately provide near real-time access to actionable molecular surveillance data to improve the MMS system of Ghana.
This is done through the rapid collection of blood samples from malaria patients by clinical staff as a preserved liquid sample followed by laboratory pooling, and next-generation sequencing. Ten NMEP sites are currently involved in this study and genotyping of samples is done in NMIMR with support from collaborators in Brown university, Bailey lab.
Funding for this project is from the Bill and Melinda Gates foundation.
This is done through the rapid collection of blood samples from malaria patients by clinical staff as a preserved liquid sample followed by laboratory pooling, and next-generation sequencing. Ten NMEP sites are currently involved in this study and genotyping of samples is done in NMIMR with support from collaborators in Brown university, Bailey lab.
Funding for this project is from the Bill and Melinda Gates foundation.
Coverage
Geographic Coverage
Ada East, Dzodze, Ejura, Kade, Kenyasi, Nkoransa, Walewale, Weija, Zebilla
Producers and sponsors
Primary investigators
| Name | Affiliation |
|---|---|
| Prof Anita Ghansah | Department of Parasitology, Noguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Legon-Accra, Ghana |
Funding Agency/Sponsor
| Name |
|---|
| Bill and Melinda Gates foundation |
Other Identifications/Acknowledgments
| Name | Role | Affiliation |
|---|---|---|
| Brown university | Support towards the study | Collaborator |
| Bailey lab | Support towards the study | Collaborator |
Data Collection
Dates of Data Collection
| Start |
|---|
| 2022 |
Data Collection Mode
A computer-assisted personal interviewing (CAPI) and Laboratory Work
Data Collection Notes
Survey data was collected using Tablets enterd in REDCap Mobile Application.
Access policy
Contacts
| Name | Affiliation | |
|---|---|---|
| Prof Anita Ghansah | Department of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Legon-Accra, Ghana | aghansah@noguchi.ug.edu.gh |
Access authority
| Name | Affiliation | URL | |
|---|---|---|---|
| Prof Anita Ghansah | Department of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Legon-Accra, Ghana | Link | aghansah@noguchi.ug.edu.gh |
Disclaimer and copyrights
Copyright
Noguchi Memorial Institute for Medical Research